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s:PostalAddress\n s:addressCountry: PT\n s:sourceOrganization:\n - class: s:Organization\n s:name: INESCTEC\n s:url: https://inesctec.pt\n s:address:\n class: s:PostalAddress\n s:addressCountry: PT\n s:author:\n - class: s:Person\n s:name: Fernando Cassola\n s:email: fernando.c.marques@inesctec.pt\n - class: s:Person\n s:name: Vitor Cavaleiro\n s:email: vitor.cavaleiro@inesctec.pt\n s:maintainer:\n - class: s:Person\n s:name: Vitor Cavaleiro\n s:email: vitor.cavaleiro@inesctec.pt\n s:contributor:\n - class: s:Person\n s:name: Miguel Correia\n s:email: miguel.r.correia@inesctec.pt\n s:codeRepository: https://pipe-drive.inesctec.pt/application-packages/tools/virtual-choreographies-transformer-plugin-cesium/virtual_choreographies_transformer_plugin_cesium_0_2_1.cwl\n s:dateCreated: '2025-05-26T10:06:27Z'\n s:sdDatePublished: '2025-06-11T14:23:07.910225Z'\n s:sdPublisher:\n class: Organization\n name: Application Package Registry\n url: https://iliad-registry.inesctec.pt\n s:identifier: urn:apkg:tool:inesctec:pt:virtual-choreographies-transformer-plugin-cesium:0.2.1\n", "producer":[ { "address":{ "address_country":"PT" }, "name":"INESCTEC", "url":"https://inesctec.pt" } ], "family":"urn:apkg:tool:inesctec:pt:virtual-choreographies-transformer-plugin-cesium" }, "id":"urn:apkg:tool:inesctec:pt:virtual-choreographies-transformer-plugin-cesium:0.2.1" }, { "geometry":{ "coordinates":[ [ [ -180.0, -90.0 ], [ 180.0, -90.0 ], [ 180.0, 90.0 ], [ -180.0, 90.0 ], [ -180.0, -90.0 ] ] ], "type":"Polygon" }, "type":"Feature", "properties":{ "outputs":[ { "id":"pipeline_output", "type":"Directory" } ], "programming_language":"python", "keywords":[ "oil spill", "SAR", "Sentinel-1", "deep learning", "object detection" ], "inputs":[ { "doc":"Path to directory as a string where to find input files and where to store outputs", "id":"use_case_directory", "type":"string" }, { "doc":"Bounding box for image search", "id":"bbox", "type":"string?" }, { "doc":"Start date for data search", "id":"start_date", "type":"string?" }, { "doc":"Time interval (n of days) for data search", "id":"time_interval", "type":"int?" }, { "doc":"End date for data search", "id":"end_date", "type":"string?" }, { "doc":"Enable verbose logging", "id":"verbose", "type":"boolean?" }, { "doc":"Enable debug mode", "id":"debug", "type":"boolean?" }, { "id":"asf_username", "type":"string" }, { "id":"asf_password", "type":"string" }, { "default":"NO", "id":"cont_slick", "type":"string" }, { "default":"NO", "id":"sat", "type":"string" }, { "default":"NO", "id":"use_high_res", "type":"string" }, { "default":24.069118741783797, "id":"min_lon", "type":"float?" }, { "default":24.990341065648366, "id":"max_lon", "type":"float?" }, { "default":35.09663196120557, "id":"min_lat", "type":"float?" }, { "default":35.990635331961315, "id":"max_lat", "type":"float?" }, { "default":35.496, "id":"lat_point", "type":"float?" }, { "default":-15.7433, "id":"lon_point", "type":"float?" }, { "default":"2024-11-07T06:22:00Z", "id":"date_spill", "type":"string?" }, { "id":"spill_dur", "type":"string" }, { "id":"spill_res", "type":"string" }, { "default":1.4, "id":"spill_tons", "type":"float" }, { "id":"username", "type":"string" }, { "id":"password", "type":"string" }, { "id":"ftp_server", "type":"string" }, { "id":"ftp_user", "type":"string" }, { "id":"ftp_password", "type":"string" }, { "id":"remote_dir", "type":"string" }, { "id":"cds_token", "type":"string?" } ], "description":"Sentinel-1 Oil Spill Object Detection Pipeline using Deep Learning tecniques", "maintainer":null, "sdPublisher":[ { "name":"Application Package Registry", "class":"Organization", "url":"https://iliad-registry.inesctec.pt" } ], "temporal_coverage":"2014-01-01T00:00:00Z/", "contributor":null, "spatial_coverage":{ "geo":{ "box":"-90 -180 90 180" }, "class":"schema:GeoShape" }, "id":"oilspill_pipeline_medslik_156", "software_version":"1.0.0", "class":"Workflow", "latest":true, "identifier":"urn:apkg:workflow:meeo_srl:it:oilspill_pipeline_medslik_156:1.0.0", "citation":"", "date_created":"2024-12-01", "author":[ { "name":"Sabrina Outmani", "email":"outmani@meeo.it" }, { "name":"Noemi Fazzini", "email":"fazzini@meeo.it" } ], "sdDatePublished":"2025-06-11T14:23:13.531113Z", "url":"https://iliad-registry.inesctec.pt/collections/apkg/items/urn:apkg:workflow:meeo_srl:it:oilspill_pipeline_medslik_156:1.0.0?f=cwl", "license":"https://opensource.org/licenses/MIT", "code_repository":null, "source_organization":[ { "address":{ "address_country":"IT" }, "name":"MEEO SRL", "url":"https://meeo.it/" }, { "address":{ "address_country":"GR" }, "name":"FORTH", "url":"https://www.forth.gr/" }, { "address":{ "address_country":"PT" }, "name":"INESCTEC", "url":"https://inesctec.pt" } ], "name":"Sentinel-1 Oil Spill Object Detection Pipeline 1-2-3-5", "cwl":"cwlVersion: v1.2\n$namespaces:\n s: https://schema.org/\n cwltool: http://commonwl.org/cwltool\n$graph:\n- class: Workflow\n id: oilspill_pipeline_medslik_156\n doc: Oil Spill Detection and Analysis Pipeline 1-2-3-5, Medslik forecasting\n inputs:\n use_case_directory:\n doc: Path to directory as a string where to find input files and where to store\n outputs\n type: string\n bbox:\n doc: Bounding box for image search\n type: string?\n start_date:\n doc: Start date for data search\n type: string?\n time_interval:\n doc: Time interval (n of days) for data search\n type: int?\n end_date:\n doc: End date for data search\n type: string?\n verbose:\n doc: Enable verbose logging\n type: boolean?\n debug:\n doc: Enable debug mode\n type: boolean?\n asf_username:\n type: string\n asf_password:\n type: string\n cont_slick:\n type: string\n default: 'NO'\n sat:\n type: string\n default: 'NO'\n use_high_res:\n type: string\n default: 'NO'\n min_lon:\n type: float?\n default: 24.069118741783797\n max_lon:\n type: float?\n default: 24.990341065648366\n min_lat:\n type: float?\n default: 35.09663196120557\n max_lat:\n type: float?\n default: 35.990635331961315\n lat_point:\n type: float?\n default: 35.496\n lon_point:\n type: float?\n default: -15.7433\n date_spill:\n type: string?\n default: '2024-11-07T06:22:00Z'\n spill_dur:\n type: string\n spill_res:\n type: string\n spill_tons:\n type: float\n default: 1.4\n username:\n type: string\n password:\n type: string\n ftp_server:\n type: string\n ftp_user:\n type: string\n ftp_password:\n type: string\n remote_dir:\n type: string\n cds_token:\n type: string?\n steps:\n step_data_search:\n in:\n bbox: bbox\n use_case_directory: use_case_directory\n start_date: start_date\n time_interval: time_interval\n end_date: end_date\n verbose: verbose\n debug: debug\n asf_username: asf_username\n asf_password: asf_password\n run: '#datasearch_tool'\n out:\n - results\n - sentinel_list\n step_preprocessing:\n in:\n use_case_directory: step_data_search/results\n sentinel_list: step_data_search/sentinel_list\n verbose: verbose\n debug: debug\n run: '#preprocessing_tool'\n out:\n - results\n - db_list\n step_object_detection:\n in:\n use_case_directory: step_preprocessing/results\n db_list: step_preprocessing/db_list\n verbose: verbose\n debug: debug\n run: '#object_detection_tool'\n out:\n - results\n - png_output_path\n - csv_output_path\n step_segmentation:\n in:\n use_case_directory: step_object_detection/results\n sentinel_list: step_data_search/sentinel_list\n png_output_path: step_object_detection/png_output_path\n csv_output_path: step_object_detection/csv_output_path\n verbose: verbose\n debug: debug\n run: '#segmentation_tool'\n out:\n - results\n step_medslik:\n in:\n use_case_directory: step_segmentation/results\n cont_slick: cont_slick\n sat: sat\n use_high_res: use_high_res\n min_lon: min_lon\n max_lon: max_lon\n min_lat: min_lat\n max_lat: max_lat\n lat_point: lat_point\n lon_point: lon_point\n date_spill: date_spill\n spill_dur: spill_dur\n spill_res: spill_res\n spill_tons: spill_tons\n username: username\n password: password\n ftp_server: ftp_server\n ftp_password: ftp_password\n ftp_user: ftp_user\n remote_dir: remote_dir\n cds_token: cds_token\n results: step_segmentation/results\n run: '#medslik_tool'\n out:\n - results\n outputs:\n pipeline_output:\n type: Directory\n outputSource: step_medslik/results\n s:name: Sentinel-1 Oil Spill Object Detection Pipeline 1-2-3-5\n s:description: Sentinel-1 Oil Spill Object Detection Pipeline using Deep Learning\n tecniques\n s:keywords:\n - oil spill\n - SAR\n - Sentinel-1\n - deep learning\n - object detection\n s:programmingLanguage: python\n s:softwareVersion: 1.0.0\n s:producer:\n class: s:Organization\n s:name: MEEO SRL\n s:url: https://meeo.it/\n s:address:\n class: s:PostalAddress\n s:addressCountry: IT\n s:sourceOrganization:\n - class: s:Organization\n s:name: MEEO SRL\n s:url: https://meeo.it/\n s:address:\n class: s:PostalAddress\n s:addressCountry: IT\n - class: s:Organization\n s:name: FORTH\n s:url: https://www.forth.gr/\n s:address:\n class: s:PostalAddress\n s:addressCountry: GR\n - class: s:Organization\n s:name: INESCTEC\n s:url: https://inesctec.pt\n s:address:\n class: s:PostalAddress\n s:addressCountry: PT\n s:author:\n - class: s:Person\n s:email: outmani@meeo.it\n s:name: Sabrina Outmani\n - class: s:Person\n s:email: fazzini@meeo.it\n s:name: Noemi Fazzini\n s:dateCreated: '2024-12-01'\n s:temporalCoverage: 2014-01-01T00:00:00Z/\n s:spatialCoverage:\n class: s:GeoShape\n s:box: -90 -180 90 180\n s:license: https://opensource.org/licenses/MIT\n s:citation: ''\n s:sdDatePublished: '2025-06-11T14:23:13.531113Z'\n s:sdPublisher:\n class: Organization\n name: Application Package Registry\n url: https://iliad-registry.inesctec.pt\n s:identifier: urn:apkg:workflow:meeo_srl:it:oilspill_pipeline_medslik_156:1.0.0\n- class: CommandLineTool\n id: datasearch_tool\n baseCommand:\n - /srv/miniconda3/envs/oilspill001/bin/python\n - -m\n - oilspill001.main\n arguments:\n - valueFrom: $(inputs.bbox)\n prefix: --bbox\n - --use-case-directory\n - valueFrom: $(inputs.use_case_directory)\n - --start-date\n - valueFrom: $(inputs.start_date)\n - valueFrom: $(inputs.time_interval)\n prefix: --time-interval\n - valueFrom: $(inputs.end_date)\n prefix: --end-date\n - valueFrom: $(inputs.verbose)\n prefix: --verbose\n - valueFrom: $(inputs.debug)\n prefix: --debug\n - --asf-username\n - valueFrom: $(inputs.asf_username)\n - --asf-password\n - valueFrom: $(inputs.asf_password)\n inputs:\n bbox:\n type: string?\n doc: Bounding box for image search\n s:name: Bounding Box\n s:description: Optional bounding box to restrict the image search.\n use_case_directory:\n type: string\n doc: Directory where to find input files and store outputs\n s:name: Use Case Directory\n s:description: Directory to store input and output files.\n start_date:\n type: string?\n doc: Start date for data search\n s:name: Start Date\n s:description: The start date to search for data.\n time_interval:\n type: int?\n doc: Time interval (n of days) for data search\n s:name: Time Interval\n s:description: Number of days for the data search interval.\n end_date:\n type: string?\n doc: End date for data search\n s:name: End Date\n s:description: The end date for data search (optional).\n verbose:\n type: boolean?\n doc: Enable verbose logging\n s:name: Verbose Logging\n s:description: Flag to enable verbose logging.\n debug:\n type: boolean?\n doc: Enable debug mode\n s:name: Debug Mode\n s:description: Flag to enable debug mode for additional logging.\n asf_username:\n type: string\n doc: Username for ASF\n s:name: ASF Username\n s:description: Username for the ASF platform authentication.\n asf_password:\n type: string\n doc: Password for ASF\n s:name: ASF Password\n s:description: Password for the ASF platform authentication.\n outputs:\n results:\n type: Directory\n outputBinding:\n glob: $(inputs.use_case_directory)\n sentinel_list:\n type: File\n outputBinding:\n glob: $(inputs.use_case_directory)/raw_sentinel/sentinel_paths.txt\n requirements:\n - class: DockerRequirement\n dockerPull: registry.services.meeo.it/outmani/iliad_oil_spill_pilot/oilspill001:1.0.0\n - class: NetworkAccess\n networkAccess: true\n - class: InlineJavascriptRequirement\n s:name: Sentinel-1 Oil Spill Detection Data Search\n s:description: ASF search for SAR images from Sentinel-1\n s:keywords:\n - oil spill\n - SAR\n - Sentinel-1\n - ASF\n s:programmingLanguage: python\n s:softwareVersion: 1.0.0\n s:producer:\n class: s:Organization\n s:name: MEEO SRL\n s:url: https://meeo.it/\n s:address:\n class: s:PostalAddress\n s:addressCountry: IT\n s:sourceOrganization:\n - class: s:Organization\n s:name: MEEO SRL\n s:url: https://meeo.it/\n s:address:\n class: s:PostalAddress\n s:addressCountry: IT\n - class: s:Organization\n s:name: FORTH\n s:url: https://www.forth.gr/\n s:address:\n class: s:PostalAddress\n s:addressCountry: GR\n - class: s:Organization\n s:name: INESCTEC\n s:url: https://inesctec.pt\n s:address:\n class: s:PostalAddress\n s:addressCountry: PT\n s:author:\n - class: s:Person\n s:name: Sabrina Outmani\n s:email: outmani@meeo.it\n - class: s:Person\n s:name: Noemi Fazzini\n s:email: fazzini@meeo.it\n s:dateCreated: '2024-12-01'\n s:temporalCoverage: 2014-01-01T00:00:00Z/\n s:spatialCoverage:\n class: s:GeoShape\n s:box: -90 -180 90 180\n s:codeRepository: null\n s:license: https://opensource.org/licenses/MIT\n s:citation: ''\n- class: CommandLineTool\n id: preprocessing_tool\n baseCommand:\n - /srv/miniconda3/envs/oilspill002/bin/python\n - -m\n - oilspill002.main\n arguments:\n - --use-case-directory\n - valueFrom: $(inputs.use_case_directory.path)\n - --sentinel-list\n - valueFrom: $(inputs.sentinel_list.path)\n - valueFrom: '${ return inputs.verbose ? ''--verbose'' : ''''; }\n\n '\n shellQuote: false\n - valueFrom: '${ return inputs.debug ? ''--debug'' : ''''; }\n\n '\n shellQuote: false\n inputs:\n use_case_directory:\n type: Directory\n doc: Directory where to find input files and store outputs\n s:name: Use Case Directory\n s:description: Directory to store input and output files.\n sentinel_list:\n type: File\n doc: .txt file containing sentinel data paths (output from application package\n 1) - sentinel_paths.txt\n s:name: Sentinel list file\n s:description: Text file containing sentinel data paths (output from application\n package 1) - sentinel_paths.txt\n verbose:\n type: boolean?\n doc: Enable verbose logging\n s:name: Verbose Logging\n s:description: Flag to enable verbose logging.\n debug:\n type: boolean?\n doc: Enable debug mode\n s:name: Debug Mode\n s:description: Flag to enable debug mode for additional logging.\n outputs:\n results:\n type: Directory\n outputBinding:\n glob: $(inputs.use_case_directory.path)\n db_list:\n type: File\n outputBinding:\n glob: $(inputs.use_case_directory.path)/intermediate_dir/db_paths.txt\n requirements:\n - class: InitialWorkDirRequirement\n listing:\n - entryname: $(inputs.use_case_directory.basename)\n entry: $(inputs.use_case_directory)\n writable: true\n - class: DockerRequirement\n dockerPull: registry.services.meeo.it/outmani/iliad_oil_spill_pilot/oilspill002:1.0.0\n - class: NetworkAccess\n networkAccess: true\n - class: InlineJavascriptRequirement\n s:name: Sentinel-1 Oil Spill Detection Pipeline Preprocessing Tool\n s:description: Pre-processing of SAR images from Sentinel-1\n s:keywords:\n - oil spill\n - SAR\n - Sentinel-1\n - snappy\n s:programmingLanguage: python\n s:softwareVersion: 1.0.0\n s:producer:\n class: s:Organization\n s:name: MEEO SRL\n s:url: https://meeo.it/\n s:address:\n class: s:PostalAddress\n s:addressCountry: IT\n s:sourceOrganization:\n s:sourceOrganization:\n - class: s:Organization\n s:name: MEEO SRL\n s:url: https://meeo.it/\n s:address:\n class: s:PostalAddress\n s:addressCountry: IT\n - class: s:Organization\n s:name: FORTH\n s:url: https://www.forth.gr/\n s:address:\n class: s:PostalAddress\n s:addressCountry: GR\n - class: s:Organization\n s:name: INESCTEC\n s:url: https://inesctec.pt\n s:address:\n class: s:PostalAddress\n s:addressCountry: PT\n s:author:\n - class: s:Person\n s:email: outmani@meeo.it\n s:name: Sabrina Outmani\n - class: s:Person\n s:email: fazzini@meeo.it\n s:name: Noemi Fazzini\n s:dateCreated: '2024-12-01'\n s:temporalCoverage: 2014-01-01T00:00:00Z/\n s:spatialCoverage:\n class: s:GeoShape\n s:box: -90 -180 90 180\n s:license: https://opensource.org/licenses/MIT\n s:citation: ''\n- class: CommandLineTool\n id: object_detection_tool\n baseCommand:\n - /srv/miniconda3/envs/oilspill003/bin/python\n - -m\n - oilspill003.main\n arguments:\n - --use-case-directory\n - valueFrom: $(inputs.use_case_directory.path)\n - --db-list\n - valueFrom: $(inputs.db_list.path)\n - valueFrom: '${ return inputs.range ? ''--range'' : ''''; }\n\n '\n shellQuote: false\n - valueFrom: '${ return inputs.verbose ? ''--verbose'' : ''''; }\n\n '\n shellQuote: false\n - valueFrom: '${ return inputs.debug ? ''--debug'' : ''''; }\n\n '\n shellQuote: false\n inputs:\n use_case_directory:\n type: Directory\n doc: Directory where to find input files and store outputs\n s:name: Use Case Directory\n s:description: Directory to store input and output files.\n db_list:\n type: File\n doc: .txt file containing paths of preprocessed sentinel-1 images (output from\n application package 2) - db_paths.txt\n s:name: Db list file\n s:description: .txt file containing paths of preprocessed sentinel-1 images\n (output from application package 2) - db_paths.txt\n range:\n type: string?\n doc: optional range 0-100 for image contrast enhancement\n s:name: Range\n s:description: optional range 0-100 for image contrast enhancement\n verbose:\n type: boolean?\n doc: Enable verbose logging\n s:name: Verbose Logging\n s:description: Flag to enable verbose logging.\n debug:\n type: boolean?\n doc: Enable debug mode\n s:name: Debug Mode\n s:description: Flag to enable debug mode for additional logging.\n outputs:\n results:\n type: Directory\n outputBinding:\n glob: $(inputs.use_case_directory.path)\n png_output_path:\n type: File\n outputBinding:\n glob: $(inputs.use_case_directory.path)/intermediate_dir/png_paths.txt\n csv_output_path:\n type: File\n outputBinding:\n glob: $(inputs.use_case_directory.path)/intermediate_dir/csv_paths.txt\n requirements:\n - class: InitialWorkDirRequirement\n listing:\n - entryname: $(inputs.use_case_directory.basename)\n entry: $(inputs.use_case_directory)\n writable: true\n - class: DockerRequirement\n dockerPull: registry.services.meeo.it/outmani/iliad_oil_spill_pilot/oilspill003:2.0.0\n - class: NetworkAccess\n networkAccess: true\n - class: InlineJavascriptRequirement\n s:name: Sentinel-1 Oil Spill Object Detection Pipeline\n s:description: Deep learning model designed for detecting oil spill signals globally\n from pre-processedSAR images from Sentinel-1.\n s:keywords:\n - oil spill\n - SAR\n - Sentinel-1\n - deep learning\n - object detection\n s:programmingLanguage: python\n s:softwareVersion: 1.0.0\n s:producer:\n class: s:Organization\n s:name: MEEO SRL\n s:url: https://meeo.it/\n s:address:\n class: s:PostalAddress\n s:addressCountry: IT\n s:sourceOrganization:\n - class: s:Organization\n s:name: MEEO SRL\n s:url: https://meeo.it/\n s:address:\n class: s:PostalAddress\n s:addressCountry: IT\n - class: s:Organization\n s:name: FORTH\n s:url: https://www.forth.gr/\n s:address:\n class: s:PostalAddress\n s:addressCountry: GR\n - class: s:Organization\n s:name: INESCTEC\n s:url: https://inesctec.pt\n s:address:\n class: s:PostalAddress\n s:addressCountry: PT\n s:author:\n - class: s:Person\n s:email: outmani@meeo.it\n s:name: Sabrina Outmani\n - class: s:Person\n s:email: fazzini@meeo.it\n s:name: Noemi Fazzini\n s:dateCreated: '2024-12-01'\n s:temporalCoverage: 2014-01-01T00:00:00Z/\n s:spatialCoverage:\n class: s:GeoShape\n s:box: -90 -180 90 180\n s:license: https://opensource.org/licenses/MIT\n s:citation: ''\n- class: CommandLineTool\n id: segmentation_tool\n baseCommand:\n - /srv/miniconda3/envs/oilspill005/bin/python\n - -m\n - oilspill005.main\n arguments:\n - --use-case-directory\n - valueFrom: $(inputs.use_case_directory.path)\n - --sentinel-list\n - valueFrom: $(inputs.sentinel_list.path)\n - --png-output-path\n - valueFrom: $(inputs.png_output_path.path)\n - --csv-output-path\n - valueFrom: $(inputs.csv_output_path.path)\n - valueFrom: '${ return inputs.delete ? ''--delete'' : ''''; }\n\n '\n shellQuote: false\n - valueFrom: '${ return inputs.verbose ? ''--verbose'' : ''''; }\n\n '\n shellQuote: false\n - valueFrom: '${ return inputs.debug ? ''--debug'' : ''''; }\n\n '\n shellQuote: false\n inputs:\n use_case_directory:\n type: Directory\n doc: Directory where to find input files and store outputs\n s:name: Use Case Directory\n s:description: Directory to store input and output files.\n sentinel_list:\n type: File\n doc: .txt file containing sentinel data paths (output from application package\n 1) - sentinel_paths.txt\n s:name: Sentinel list file\n s:description: Text file containing sentinel data paths (output from application\n package 1) - sentinel_paths.txt\n png_output_path:\n type: File\n doc: .txt file containing png data paths (output from application package 3)\n - png_paths.txt\n s:name: Png list file\n s:description: Text file containing sentinel data paths (output from application\n package 3) - png_paths.txt\n csv_output_path:\n type: File\n doc: .txt file containing csv data paths (output from application package 3)\n - csv_paths.txt\n s:name: Csv list file\n s:description: Text file containing sentinel data paths (output from application\n package 3) - csv_paths.txt\n delete:\n type: boolean?\n doc: Enable deletion of generated auxiliary files\n s:name: null\n s:description: Enable deletion of generated auxiliary files\n verbose:\n type: boolean?\n doc: Enable verbose logging\n s:name: Verbose Logging\n s:description: Flag to enable verbose logging.\n debug:\n type: boolean?\n doc: Enable debug mode\n s:name: Debug Mode\n s:description: Flag to enable debug mode for additional logging.\n outputs:\n results:\n type: Directory\n outputBinding:\n glob: $(inputs.use_case_directory.path)\n requirements:\n - class: InitialWorkDirRequirement\n listing:\n - entryname: $(inputs.use_case_directory.basename)\n entry: $(inputs.use_case_directory)\n writable: true\n - class: DockerRequirement\n dockerPull: registry.services.meeo.it/outmani/iliad_oil_spill_pilot/oilspill005:1.0.0\n - class: NetworkAccess\n networkAccess: true\n - class: InlineJavascriptRequirement\n s:name: Sentinel-1 Oil Spill Detection and Segmentation Pipeline\n s:description: Deep learning model for detection and segmentation oil spills in\n Sentinel-1 SAR images.\n s:keywords:\n - oil spill\n - SAR\n - Sentinel-1\n - deep learning\n - segmentation\n s:programmingLanguage: python\n s:softwareVersion: 1.0.0\n s:producer:\n class: s:Organization\n s:name: MEEO SRL\n s:url: https://meeo.it/\n s:address:\n class: s:PostalAddress\n s:addressCountry: IT\n s:sourceOrganization:\n - class: s:Organization\n s:name: MEEO SRL\n s:url: https://meeo.it/\n s:address:\n class: s:PostalAddress\n s:addressCountry: IT\n - class: s:Organization\n s:name: FORTH\n s:url: https://www.forth.gr/\n s:address:\n class: s:PostalAddress\n s:addressCountry: GR\n - class: s:Organization\n s:name: INESCTEC\n s:url: https://inesctec.pt\n s:address:\n class: s:PostalAddress\n s:addressCountry: PT\n s:author:\n - class: s:Person\n s:email: outmani@meeo.it\n s:name: Sabrina Outmani\n - class: s:Person\n s:email: fazzini@meeo.it\n s:name: Noemi Fazzini\n s:dateCreated: '2024-12-01'\n s:temporalCoverage: 2014-01-01T00:00:00Z/\n s:spatialCoverage:\n class: s:GeoShape\n s:box: -90 -180 90 180\n s:license: https://opensource.org/licenses/MIT\n s:citation: ''\n- class: CommandLineTool\n id: medslik_tool\n baseCommand:\n - /opt/miniconda3/envs/application/bin/python\n - /opt/MEDSLIK/RUN_medslik.py\n arguments:\n - --use_case_directory\n - valueFrom: $(inputs.use_case_directory.path)\n - --cont_slick\n - $(inputs.cont_slick)\n - --sat\n - $(inputs.sat)\n - --use_high_res\n - $(inputs.use_high_res)\n - --min_lon\n - $(inputs.min_lon)\n - --max_lon\n - $(inputs.max_lon)\n - --min_lat\n - $(inputs.min_lat)\n - --max_lat\n - $(inputs.max_lat)\n - --lat_point\n - $(inputs.lat_point)\n - --lon_point\n - $(inputs.lon_point)\n - --date_spill\n - $(inputs.date_spill)\n - --spill_dur\n - $(inputs.spill_dur)\n - --spill_res\n - $(inputs.spill_res)\n - --spill_tons\n - $(inputs.spill_tons)\n - --username\n - $(inputs.username)\n - --password\n - $(inputs.password)\n - --ftp_server\n - $(inputs.ftp_server)\n - --ftp_user\n - $(inputs.ftp_user)\n - --ftp_password\n - $(inputs.ftp_password)\n - --remote_dir\n - $(inputs.remote_dir)\n - --cds_token\n - $(inputs.cds_token)\n inputs:\n use_case_directory:\n type: Directory\n doc: Directory where to find input files and store outputs\n s:name: Use Case Directory\n s:description: Directory to store input and output files.\n cont_slick:\n type: string\n default: 'NO'\n sat:\n type: string\n default: 'NO'\n use_high_res:\n type: string\n default: 'NO'\n min_lon:\n type: float?\n default: 24.069118741783797\n max_lon:\n type: float?\n default: 24.990341065648366\n min_lat:\n type: float?\n default: 35.09663196120557\n max_lat:\n type: float?\n default: 35.990635331961315\n lat_point:\n type: float?\n default: 35.496\n lon_point:\n type: float?\n default: -15.7433\n date_spill:\n type: string?\n default: '2024-11-07T06:22:00Z'\n spill_dur:\n type: string\n spill_res:\n type: string\n spill_tons:\n type: float\n default: 1.4\n username:\n type: string\n password:\n type: string\n ftp_server:\n type: string\n ftp_user:\n type: string\n ftp_password:\n type: string\n remote_dir:\n type: string\n cds_token:\n type: string?\n results:\n type: Directory\n inputBinding:\n position: 1\n outputs:\n results:\n outputBinding:\n glob: $(runtime.outdir)/OUT/\n type: Directory\n doc: All results\n requirements:\n - class: InlineJavascriptRequirement\n - class: DockerRequirement\n dockerPull: antonisparasyris/iliad:medslik-1.0\n - class: EnvVarRequirement\n envDef:\n PATH: /opt/miniconda3/envs/application/bin:/opt/conda/bin:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin\n - class: NetworkAccess\n networkAccess: true\n hints:\n cwltool:Secrets:\n secrets:\n - username\n - password\n - ftp_server\n - ftp_password\n s:name: medslik\n s:softwareVersion: 0.1.0\n s:description: medslik\n s:keywords:\n - medslik\n - oil spill\n s:programmingLanguage: python\n s:producer:\n class: s:Organization\n s:name: FORTH\n s:url: https://forth.gr\n s:address:\n class: s:PostalAddress\n s:addressCountry: GR\n s:sourceOrganization:\n - class: s:Organization\n s:name: FORTH\n s:url: https://www.forth.gr/\n s:address:\n class: s:PostalAddress\n s:addressCountry: GR\n s:author:\n - class: s:Person\n s:email: antonisparasyris@iacm.forth.gr\n s:name: Antonios Parasyris\n s:mantainer:\n - class: s:Person\n s:email: vasmeth@iacm.forth.gr\n s:name: Vassiliki Metheniti\n s:contributor:\n - class: s:Person\n s:name: Miguel Correia\n s:email: miguel.r.correia@inesctec.pt\n s:codeRepository: null\n s:dateCreated: '2025-01-27T16:00:00Z'\n", "producer":[ { "address":{ "address_country":"IT" }, "name":"MEEO SRL", "url":"https://meeo.it/" } ], "family":"urn:apkg:workflow:meeo_srl:it:oilspill_pipeline_medslik_156" }, "id":"urn:apkg:workflow:meeo_srl:it:oilspill_pipeline_medslik_156:1.0.0" } ], "numberMatched":191, "numberReturned":10, "links":[ { "type":"application/geo+json", "rel":"self", "title":"This document as GeoJSON", "href":"https://iliad-registry.inesctec.pt/collections/apkg/items?f=json" }, { "rel":"alternate", "type":"application/ld+json", "title":"This document as RDF (JSON-LD)", "href":"https://iliad-registry.inesctec.pt/collections/apkg/items?f=jsonld" }, { "type":"text/html", "rel":"alternate", "title":"This document as HTML", "href":"https://iliad-registry.inesctec.pt/collections/apkg/items?f=html" }, { "type":"application/geo+json", "rel":"next", "title":"items (next)", "href":"https://iliad-registry.inesctec.pt/collections/apkg/items?offset=10" }, { "type":"application/json", "title":"Application Packages", "rel":"collection", "href":"https://iliad-registry.inesctec.pt/collections/apkg/items" } ], "timeStamp":"2026-07-26T19:31:52.806446Z" }